RSS

Classification by Original eProtS


Enzymes

  • Alcohol dehydrogenase class IV sigma chain [Homo sapiens (human)]: PDB:1D1S
  • 3-isopropylmalate dehydrogenase [Thermus thermophilus (bacteria,thermophile)]: PDB:1IPD
  • Vanadium-containing chloroperoxidase (CPO) [Curvularia inaequalis]: PDB:1VNC
  • Cytochrome c peroxidase [Saccharomyces cerevisiae (Baker's yeast)]: PDB:2CYP
  • Biphenyl-2,3-diol 1,2-dioxygenase [Burkholderia cepacia (bacteria)]: PDB:1HAN
  • Luciferase [Photinus pyralis (north american firefly)]: PDB:1LCI
  • Superoxide dismutase [Homo sapiens (human)]: PDB:1SPD
  • Ribonucleotide reductase [Escherichia coli (bacteria)]: PDB:1MXR
  • Pyruvate dehydrogenase complex [Geobacillus stearothermophilus (bacteria,thermophile)]: PDB:1W85
  • deoxyribonucleic acid (DNA) [N/A (synthetic)]: PDB:1BNA
  • Tryptophan operon repressor/operator complex [Escherichia coli (bacteria)]: PDB:1TRO
  • Complex of (Arginyl-tRNA synthetase/tRNA/Arginine) [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1F7U
  • DNA-DIRECTED RNA POLYMERASE II [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1I6H
  • DNA repair enzyme [Homo sapiens (human)]: PDB:1EWN
  • TAQ polymerase (DNA synthesizer)/DNA complex [Thermus aquaticus (bacteria)]: PDB:1TAU
  • Restriction enzyme EcoRV/DNA complex (before DNA cleave, without Mg2+ ion) [Escherichia coli (bacteria)]: PDB:1RVA
  • Restriction enzyme EcoRV / DNA Complex (after DNA cleaved, with Mg2+ ion) [Escherichia coli (bacteria)]: PDB:1RVC
  • Transcriptional activator GCN4/DNA complex [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1YSA
  • The zinc finger (DNA binding site) of transcription factor Zif268/DNA complex [Mus musculus (house mouse)]: PDB:1ZAA
  • Ribosome recycling factor (RRF) [Thermotoga maritima (thermophile, bacteria)]: PDB:1DD5
  • Eukaryotic protein Release Factor eRF1 [Homo sapiens (human)]: PDB:1DT9
  • Replication terminator protein(Tus)/DNA complex [Escherichia coli]: PDB:1ECR
  • Transcription factor c-Fos-c-Jun / DNA complex [Homo sapiens (Human)]: PDB:1FOS
  • mRNA decapping enzyme Dcp1p [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1Q67
  • Transcription factor IIB / RNA polymerase II complex [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1R5U
  • Bifunctional DNA primase-polymerase [Sulfolobus islandicus (archaea)]: PDB:1RNI
  • MutY adenine DNA glycosylase/DNA lesion in A*oxoG pair complex [Bacillus stearothermophilus (bacteria)]: PDB:1RRQ
  • RNA polymerase II-transcribing complex in the post-translocation state [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1SFO
  • clamp loader (RFC) bound to the DNA sliding clamp (PCNA) [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1SXJ
  • Group I self-splicing intron in complex with its exons [Homo sapiens (Human)]: PDB:1U6B
  • Argonaute (RNA interference protein) [Pyrococcus furiosus DSM 3638 (archaea, thermophile)]: PDB:1U04
  • Human Argonaute2 to form minimal RISC [Pyrococcus furiosus (archaea)]: PDB:1Z25
  • DNA repairing complex RecBCD [Escherichia coli (bacteria)]: PDB:1W36
  • RNA packing motor protain [Pseudomonas phage PHI12]: PDB:1W44
  • Human Telomeric DNA (monomer with 22 bases) [Homo sapiens (human)]: PDB:1KF1
  • SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54 [Danio rerio (zebra fish)]: PDB:1Z3I
  • A Piwi domain (part of RNAi protein argonaut)/siRNA-like duplex complex [Archaeoglobus fulgidus]: PDB:2BGG
  • E. coli DNA polymerase III, beta-subunit [Escherichia coli (bacteria)]: PDB:2POL
  • E. coli DNA polymerase III, beta-subunit / DNA complex [Escherichia coli]: PDB:3BEP
  • Sex-lethal (Sxl) protein/RNA complex [Drosophila melanogaster (fruit fly)]: PDB:1B7F
  • Restriction endonuclease BamHI/DNA complex [Bacillus amyloliquefaciens (bacteria)]: PDB:1BHM
  • Trp RNA-Binding Attenuation Protein/RNA complex [Bacillus stearothermophilus (bacteria)]: PDB:1C9S
  • Catabolite gene activator protein complex with DNA [Escherichia coli (bacteria)]: PDB:1CGP
  • Met repressor-operator complex [Escherichia coli (bacteria)]: PDB:1CMA
  • human 8-oxoguanine glycosylase (hOGG1) bound to DNA [Homo sapiens (human)]: PDB:1EBM
  • Mammalian Poly(A) Polymerase [Bos taurus (bovine)]: PDB:1F5A
  • lac repressor [Escherichia coli (bacteria)]: PDB:1LBI
  • Deoxyribodipyrimidine photolyase/DNA complex [Synechococcus sp. PCC 6301 (cyanobacteria)]: PDB:1TEZ
  • XPD helicase [Sulfolobus acidocaldarius]: PDB:3CRV
  • SR (serine/arginine rich) protein kinase SRPK1 / peptide complex [Homo sapiens (human)]: PDB:1WBP
  • Intein PI-SceI homing endonuclease [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1DFA
  • Intein PI-SceI homing endonuclease / DNA complex [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1LWS
  • YibK methyltransferase (knot protein) complexed with an inhibitor (AdoHcy) [Haemophilus influenzae (bacteria)]: PDB:1MXI
  • Hypothetical RNA 2'-O-ribose methyltransferase (RrmA) [Thermus thermophilus (bacteria)]: PDB:1IPA
  • 5-methyluridine methyltransferase TrmA [Escherichia coli]: PDB:3BT7
  • Phage twort group I ribozyme (self-splicing intron) complexed with it's product [Bacteriophage Twort (virus)]: PDB:1Y0Q
  • CCA-adding enzyme [Archaeoglobus fulgidus (Archaea)]: PDB:1UET
  • Histon modification protein WRD5 / histon subunit H3 complex [Human]: PDB:2H13
  • Ftsk(C-domain) hexmer [Bacteria(Pseudomonas-aeruginosa)]: PDB:2IUU
  • Protein phosphatase 2A (heterotrimeric holoenzyme) [Homo sapiens (human) ]: PDB:2IAE
  • Glutamate decarboxylase 1(GAD) / cofactor PLP complexed [human]: PDB:2OKJ

Virus

  • HIV-1 enverope protein gp120/b12 complex [Human]: PDB:2NY7
  • Salmonella effector protein SopA [Salmonella bacterium]: PDB:2QYU

Cancer related

  • C-H-RAS P21 protein catalytic domain (wild type) [Homo sapiens (human)]: PDB:1Q21
  • C-H-RAS P21 protein catalytic domain (oncogenic G12V) [Homo sapiens (human)]: PDB:2Q21
  • NAD(P)H:quinone oxidoreductase 1 [Homo sapiens (human)]: PDB:1GG5
  • Interleukin-18 [Homo sapiens (human)]: PDB:1J0S
  • Cisplatin/DNA complex [N/A]: PDB:5BNA
  • SV40 large tumor antigen [Simian virus 40 (virus)]: PDB:1SVM
  • Peutz-Jeghers cancer syndrome (PJS) related protein Mo25 Alpha in Complex with the C-Terminus of the Pseudo Kinase STE-20 Related Adaptor [Homo sapiens (human)]: PDB:1UPK
  • Arginases I and nor-NOHA complex [Rattus norvegicus (rat)]: PDB:1HQH
  • Nicotinamide phosphoribosyltransferase (NMPRTase): Complex with FK866 [Human]: PDB:2GVJ

Plant proteins

  • Light harvesting protein B-800/850 [Rhodopseudomonas acidophila (phototrophic bacteria)]: PDB:1KZU
  • Photosystem I P700 chlorophyll a apoprotein A1 [Synechococcus elongatus (cyanobacteria)]: PDB:1JB0
  • Photosystem II [Synechococcus elongatus (cyanobacteria)]: PDB:1FE1
  • Photosynthetic Reaction Center [Rhodopseudomonas viridis (phototrophic bacteria)]: PDB:1PRC
  • Nitrogenase molybdenum iron protein [Azotobacter vinelandii (aerobic nitrogen-fixing bacteria)]: PDB:3MIN
  • Papain [Carica papaya (Papaya)]: PDB:9PAP
  • Crambin [Crambe abyssinica (Abyssinian cabbage)]: PDB:1CRN
  • Cyanobacterial photosystem II [Thermosynechococcus elongatus (cyanobacteria)]: PDB:1S5L
  • light-harvesting complex of photosystem II (LHC-II) [Spinacia oleracea (Spinach) ]: PDB:1RWT
  • Cytochrome b6f complex [Mastigocladus laminosus (cyanobacteria)]: PDB:1VF5
  • Archaeal Rrp4 Exosomes [Archaeoglobus fulgidus (archaea)]: PDB:2BA0

Movement

  • Myosin heavy chain [Argopecten irradians (bay scallop)]: PDB:1B7T
  • Actin/DNase I complex [Oryctolagus cuniculus (European rabbit)]: PDB:1ATN
  • human cardiac troponin in the Ca2+-saturated form [Homo sapiens (human)]: PDB:1J1D
  • Bni1p Formin Homology 2 (FH2) Domain complexed with ATP-actin [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1Y64
  • Ta0583, an archaeal actin homolog [Thermoplasma acidophilum (archaea,thermophile)]: PDB:2FSN

Drug target

  • Prostaglandin H2 synthase-1 complex with flurbiprofen [Ovis aries (sheep)]: PDB:1CQE
  • Beta-lactamase [Bacillus licheniformis (bacteria)]: PDB:4BLM
  • beta-secretase 2 (BACE2) [Homo sapiens (human)]: PDB:2EWY
  • Nicotinamide phosphoribosyltransferase (NMPRTase) [Human]: PDB:2GVG

Protein folding

  • Chaperonin (GroEL-GroES) / ADP complex [Escherichia coli (bacteria)]: PDB:1AON
  • Thiol:disulfide interchange protein DsbC [Escherichia coli (bacteria)]: PDB:1EEJ
  • Heat shock protein HSP33 [Escherichia coli (bacteria)]: PDB:1HW7
  • Heat shock protein Hsc70/Hsp110 complex [Bovine/Yeast]: PDB:3C7N
  • Flavoenzyme Ero1p [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1RP4
  • Periplasmic chaperone Skp [Escherichia coli (bacteria)]: PDB:1SG2
  • Ribosomal chaperon trigger factor complexed with 50S ribosome [Escherichia coli (bacteria)]: PDB:1W26
  • Trp-cage designed protein TC5b [N/A (synthetic)]: PDB:1L2Y

Oxygen Transport and Storage

Hormones, Cytokines, and Receptors

  • Insulin [Sus scrofa (pig)]: PDB:4INS
  • Interferon alpha 2B [Homo sapiens (human)]: PDB:1RH2
  • Interleukin-1 beta [Homo sapiens (human)]: PDB:1I1B
  • Growth hormon complexed with its receptor [Homo sapiens (human)]: PDB:3HHR
  • Androgen receptor [Homo sapiens (human)]: PDB:1E3G
  • Bone morphogenetic protein 2 (BMP2)/BRIA ectodomain complex [Homo sapiens (human)]: PDB:1ES7
  • Human LDL receptor (extracellular domain) [Homo sapiens (human)]: PDB:1N7D
  • Acetylcholine Receptor [Torpedo californica]: PDB:1OED
  • Retinoic acid receptor-gamma / retinoic acid complex [Homo sapiens (human)]: PDB:2LBD
  • B-cell-activating factor (BAFF)/BAFF recepter (BAFF-R) complex [Homo sapiens (human)]: PDB:1OTZ
  • GM-CSF/GM-CSF receptor complex [Homo sapiens]: PDB:3CXE

Cell regulation and Apotosis

  • Cyclin A/cyclin-dependent kinase 2(CDK-2) complex [Homo sapiens (human)]: PDB:1FIN
  • Interleukin-1beta converting enzyme(ICE)/inhibitor peptide complex [Homo sapiens (human)]: PDB:1IBC
  • Apoptosis inhibitor BCL-XL [Homo sapiens (human)]: PDB:1MAZ
  • Tyrosine-protein kinase c-Src/AMP-PNP complex [Homo sapiens (human)]: PDB:2SRC
  • Sialyltransferase CstII/CMP-NeuAc complex [Campylobacter jejuni (bacteria)]: PDB:1RO7
  • Integrin/cacodylate ion complex [Homo sapiens (human)]: PDB:1TYE
  • Apoptotic protease-activating factor 1 with ADP [Homo sapiens (human)]: PDB:1Z6T
  • Axonin-1 (N-terminal domain) [Gallus gallus (chicken)]: PDB:1CS6
  • Apoptosis-inducing ligand 2 (Apo2L,TRAIL)/death receptor 5 (DR5) complex [Homo sapiens (human)]: PDB:1D0G
  • Rabex-5/ubiquitin complex [Homo sapiens (human)]: PDB:2C7N
  • Complex of integrin B-subunit cytoplasmic domain and talin F3 domain [Gallus gallus domesticus(chicken)]: PDB:2H7E
  • Inositol-requiring protein-1 [Yeast]: PDB:2RIO

Metal transporters, Pumps, and Channels

  • Iron transport protein Serotransferrin (serum transferrin) [Sus scrofa (pig)]: PDB:1H76
  • Transferrin (iron transport protein) receptor (TfR) protein [Homo sapiens (human)]: PDB:1CX8
  • Ferritin (iron transport protein) H-chain mutant (LYS 86 replaced by GLN) [Homo sapiens (human)]: PDB:1FHA
  • Calmodulin [Homo sapiens (human)]: PDB:1CLL
  • Ca-activated K+ channel [Methanothermobacter thermautotrophicus (archaea)]: PDB:1LNQ
  • Mechanosensitive ion channel [Mycobacterium tuberculosis (bacteria)]: PDB:2OAR
  • Water channel aquaporin-0 [Ovis aries (sheep)]: PDB:1SOR
  • Calcium Pump with a bound ATP analogue [Oryctolagus cuniculus (rabbit)]: PDB:1VFP
  • Sarcoplasmic reticulum calcium pump [Oryctolagus cuniculus (rabbit)]: PDB:2ZBD
  • KcsA Potassium channel [Streptomyces lividans (bacteria)]: PDB:1BL8
  • Aquaporin 1 water channel [Bos taurus (bovine)]: PDB:1J4N
  • KvAP, a voltage-dependent K+ channel [Aeropyrum pernix (archaea)]: PDB:1ORQ
  • Inward rectifier potassium channel KirBac1.1 [Burkholderia pseudomallei (bacteria)]: PDB:1P7B
  • Potassium-channel KcsA [Streptomyces lividans (actinobacteria)]: PDB:1ZWI
  • Phosphoporin [Escherichia coli (bacteria)]: PDB:1PHO
  • Outer membrane porin D2 (OprD) [Pseudomonas aeruginos]: PDB:2ODJ

Material transport

  • LDL receptor-binding domain of Apolipoprotein E3 [Homo sapiens (human)]: PDB:1LPE
  • Alpha-thrombin/hirudin complex [Homo sapiens (human)/Hirudo medicinalis (leech)]: PDB:4HTC
  • Clathrin heavy chain [Bos taurus (bovine)]: PDB:1B89
  • Long-chain fatty acid transporter (FadL) [Escherichia coli (bacteria)]: PDB:1T16
  • Serum albumin precursor [Homo sapiens (human)]: PDB:1UOR
  • N-terminal Domain of Nucleoporin Nup159 [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1XIP
  • Multidrug efflux transporter AcrB [Escherichia coli (bacteria)]: PDB:1IWG
  • Glutamate transporter homolog [Pyrococcus horikoshii OT3 (archaea)]: PDB:1XFH
  • Periplasmic binding protein [Bordetella pertussis Tohama I (bacteria)]: PDB:2F5X
  • Amphiphysin BAR domain [Drosophila melanogaster (fruit fly)]: PDB:1URU
  • ABC transporters Sav1866 [S. aureus]: PDB:2HYD
  • Rab11/FIP2(RBD domain) complex [Human]: PDB:2GZD

Signaling

  • Rhodopsin [Bos taurus (Bovine)]: PDB:1F88
  • Protein kinase CheY/CheA complex (bacteria chemotaxis) [Escherichia coli (bacteria)]: PDB:1A0O
  • DBL homology domain from beta-PIX [Homo sapiens (human)]: PDB:1BY1
  • Ubiquitin ligase complex [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1LDD
  • ESCRT-II complex [Saccharomyces cerevisiae (Baker's yeast)]: PDB:1U5T
  • Fungal galectin CGL2 [Coprinopsis cinerea (Inky cap fungus)]: PDB:1UL9
  • Bet3 in Golgi localization of tethering factor TRAPP [Mus musculus (house mouse)]: PDB:1WC8
  • Bacterial sensory rhodopsin [Anabaena sp. (cyanobacteria)]: PDB:1XIO
  • Murine CAR nuclear receptor/inverse agonist androstenol complex [Mus musculus (house mouse)]: PDB:1XNX
  • Ubiquitin ligase(E6AP)/ubiquitin-conjugating enzyme(UbcH7) complex [Homo sapiens (human)]: PDB:1C4Z
  • Arginases I and nor-NOHA complex [Rattus norvegicus (rat)]: PDB:1HQH
  • Mitogen-activated protein (MAP) kinase ERK2 [Rattus norvegicus (rat)]: PDB:1ERK
  • SRP/SRP receptor complex [Thermus aquaticus (bacteria)]: PDB:1RJ9
  • Ligand-binding domain of human nuclear receptor liver receptor homolog 1 (hLRH-1) in complex with the NR box 1 motif of human SHP [Homo sapiens (human)]: PDB:1YUC
  • Rab5 complex with Rabaptin5 C-terminal Domain [Homo sapiens (human)]: PDB:1TU3
  • DNA binding domain of human liver receptor homologue(hLRH-1 DBD) in Complex with dsDNA [Homo sapiens (human)]: PDB:2A66
  • Adenylyl Cyclase in complex with alpha,beta-methylene-ATP [Spirulina platensis (cyanobacteria)]: PDB:1WC0
  • SUMO1-conjugated thymine DNA glycosylase [Homo sapiens (human)]: PDB:1WYW
  • Transcription regulating factor CSL-Notch-Mastermind/DNA complex [Caenorhabditis elegans (nematode)]: PDB:2FO1
  • Retinol binding protein [Homo sapiens (human)]: PDB:1BRP
  • quorum-sensing protein SdiA [bacteria (E.coli)]: PDB:2AVX
  • Nuclear receptor mSF-1 LBD complexed with PG(ligand) [mouse]: PDB:1YMT

Pigments and Luminescence

  • Crustacyanin [Homarus gammarus (European lobster)]: PDB:1GKA
  • Green fluorescent protein [Aequorea victoria (jellyfish)]: PDB:1EMA

Body maintenance and components

  • E-cadherin [Mus musculus (house mouse)]: PDB:1EDH
  • Neural-cadherin (N-cadherin) [Mus musculus (house mouse)]: PDB:1NCI
  • Antifreeze protein isoform hplc6 [Pseudopleuronectes americanus (winter flounder)]: PDB:1WFB
  • Coagulation factor VIII precursor [Homo sapiens (human)]: PDB:1D7P
  • Collagen-like peptide [Homo sapiens (human)?]: PDB:1CAG
  • Nerve growth factor in complex with its receptor, p75 [Homo sapiens (human)]: PDB:1SG1
  • Gamma-B crystallin (eye lens components protein) [Bos taurus (Bovine)]: PDB:4GCR
  • Tie2 receptor ectodomain complexed with Ang2 [Human]: PDB:2GY7

Artificially synthesized protein

  • Trp-cage designed protein TC5b [N/A (synthetic)]: PDB:1L2Y
  • Artificial nucleotide-binding protein (ANBP) in a complex with bound ADP [N/A (synthetic)]: PDB:1UW1

Others

Being written

  • Gamma delta resolvase / DNA complex [Escherichia coli]: PDB:1GDT
  • [Not available]: PDB:1J2J
  • [Not available]: PDB:1MAH
  • [Not available]: PDB:1Z7C
  • [Not available]: PDB:2AJE
  • [Not available]: PDB:2BRQ
  • [Not available]: PDB:2BR4
  • 3-ketoacyl-coA thiolase 2 [Arabidopsis thaliana (mouse-ear cress)]: PDB:2C7Y
  • Transcription-repair coupling factor [Escherichia coli]: PDB:2EYQ
  • Thiamine pyrophosphate-specific riboswitch [Escherichia coli (bacteria)]: PDB:2GDI
  • S-adenosylmethionine riboswitch [Thermoanaerobacter tengcongensis]: PDB:2GIS
  • Mitochondrial import receptor TOM70 [Saccharomyces cerevisiae (yeast)]: PDB:2GW1